Assoc. Prof. Dr.
Orkide COŞKUNER WEBER

Faculty of Science

Molecular Biotechnology

SHORT CV

Education

2000 - 2003
Doktor

Universität zu Köln

Fizikokimya
1996 - 2000
Master

Universitaet zu Köln

Kimya
1990 - 1996
Bachelor

ORTA DOĞU TEKNİK ÜNİVERSİTESİ

FEN-EDEBİYAT FAKÜLTESİ, KİMYA BÖLÜMÜ

Academic Titles

2019
Dozent

TÜRK-ALMAN ÜNİVERSİTESİ,

FEN FAKÜLTESİ, MOLEKÜLER BİYOTEKNOLOJİ BÖLÜMÜ
2017
Assistenzprofessor

TÜRK-ALMAN ÜNİVERSİTESİ,

FEN FAKÜLTESİ, MOLEKÜLER BİYOTEKNOLOJİ BÖLÜMÜ
2014
Assistenzprofessor

NIST, AMERİKA BİRLEŞİK DEVLETLERİ

Sciences, Chemistry
2009
Assistenzprofessor

University of Texas at San Antonio, AMERİKA BİRLEŞİK DEVLETLERİ

Sciences, Chemistry
2008
Lehrbeauftragte (r)

Georgetown University, AMERİKA BİRLEŞİK DEVLETLERİ

Sciences, Chemistry
2007
Assistenzprofessor

George Mason University, AMERİKA BİRLEŞİK DEVLETLERİ

Engineering, Materials Science and Engineering
2005
Lehrbeauftragte (r)

Stanford University, AMERİKA BİRLEŞİK DEVLETLERİ

Sciences, SSRL
2003
Lehrbeauftragte (r)

Johns Hopkins University, AMERİKA BİRLEŞİK DEVLETLERİ

Engineering, Chemical and Biomolecular Engineering
1999
Wissenschaftliche (r) Mitarbeiter (in)

Universitaet zu Köln, ALMANYA

Naturwissenschaften, Chemie

ACADEMIC STUDIES

  • International

    (2024) Structures prediction and replica exchange molecular dynamics simulations of α-synuclein: A case study for intrinsically disordered proteins

    Authors: COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: International Journal of Biological Macromolecules, Number of Authors: 1, Month: September, Language: Englisch, Volume: 276, Doi: 10.1016/j.ijbiomac.2024.133813, ISSN: 0141-8130, Access Type: Printversion+Elektronisch, Article Link: http://dx.doi.org/10.1016/j.ijbiomac.2024.133813 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı>Biyoloji>Biyoteknoloji, Article Type: Originalartikel,

    (2024) Liquid-Liquid Phase Separation Associated with Intrinsically Disordered Proteins: Experimental and Computational Tools

    Authors: COŞKUNER WEBER ORKİDE, Uversky Vladimir N., Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: Current Protein & Peptide Science, Number of Authors: 2, Month: Juli, Language: Englisch, Volume: 25, Doi: 10.2174/0113892037314062240618193044, ISSN: 1389-2037, Access Type: Printversion+Elektronisch, Article Link: http://dx.doi.org/10.2174/0113892037314062240618193044 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı>Biyoloji>Biyoteknoloji, Article Type: Rezension,

    (2024) Intrinsically Disordered Proteins by Homology Modeling and Replica Exchange Molecular Dynamics Simulations: A Case Study of Amyloid-β42

    Authors: COŞKUNER WEBER ORKİDE, Index Type: TR DİZİN, Type: people.with_referee, Journal Name: Journal of the Turkish Chemical Society Section A: Chemistry, Number of Authors: 1, Month: Juni, Language: Englisch, Doi: 10.18596/jotcsa.1457169, ISSN: 2149-0120, Access Type: Printversion+Elektronisch, Article Link: http://dx.doi.org/10.18596/jotcsa.1457169 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı>Biyoloji>Biyoteknoloji, Article Type: Originalartikel,

    (2024) Structural Properties of Rat Intestinal Fatty Acid-Binding Protein with its Dynamics: Insights into Intrinsic Disorder

    Authors: Ballı Öykü İrem, Caglayan Sule Irem, Uversky Vladimir, COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: Protein & Peptide Letters, Number of Authors: 4, Month: Juni, Language: Englisch, Volume: 31, Doi: 10.2174/0109298665313811240530055004, ISSN: 0929-8665, Access Type: Printversion+Elektronisch, Article Link: http://dx.doi.org/10.2174/0109298665313811240530055004 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı>Biyoloji>Biyoteknoloji, Article Type: Originalartikel,

    (2024) Current Stage and Future Perspectives for Homology Modeling, Molecular Dynamics Simulations, Machine Learning with Molecular Dynamics, and Quantum Computing for Intrinsically Disordered Proteins and Proteins with Intrinsically Disordered Regions

    Authors: COŞKUNER WEBER ORKİDE, Uversky Vladimir N., Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: Current Protein & Peptide Science, Number of Authors: 2, Month: Februar, Language: Englisch, Volume: 25, Doi: 10.2174/0113892037281184231123111223, ISSN: 1389-2037, Access Type: Printversion+Elektronisch, Article Link: http://dx.doi.org/10.2174/0113892037281184231123111223 , Subject Matter Knowledge: Mühendislik Temel Alanı>Bilgisayar Bilimleri ve Mühendisliği>Biyoenformatik>Kuantum Hesaplama>Algoritmalar ve Hesaplama Kuramı>icsel düzensiz proteinler , Article Type: Originalartikel,

    (2023) The impacts of the mitochondrial myopathy-associated G58R mutation on the dynamic structural properties of CHCHD10

    Authors: ALICI HAKAN, Uversky Vladimir N., Kang David, Woo Junga Alexa, COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, Number of Authors: 5, Month: Juni, Language: Englisch, Doi: 10.1080/07391102.2023.2227713, ISSN: 0739-1102, Access Type: Printversion+Elektronisch, Article Link: http://dx.doi.org/10.1080/07391102.2023.2227713 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı>Moleküler Biyoloji ve Genetik>Moleküler Biyoloji>Biyoteknoloji, Article Type: Originalartikel,

    (2023) Frontotemporal Dementia-Related V57E Mutation Impairs Mitochondrial Function and Alters the Structural Properties of CHCHD10

    Authors: ALICI HAKAN, Uversky Vladimir N., Liu Tian, Kang David, woo junga alexa, COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: ACS Chemical Neuroscience, Number of Authors: 6, Month: Mai, Language: Englisch, Volume: 14, Page: 2134-2145, Doi: 10.1021/acschemneuro.3c00125, ISSN: 1948-7193, Access Type: Printversion+Elektronisch, Article Link: http://dx.doi.org/10.1021/acschemneuro.3c00125 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı>Moleküler Biyoloji ve Genetik>Moleküler Biyoloji>Biyoteknoloji>Genetik, Article Type: Originalartikel,

    (2023) Intrinsically Disordered Synthetic Polymers in Biomedical Applications

    Authors: Yüce Eraraslan Elif, Domb Abraham J., Kasem Haytam, Uversky Vladimir N., COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: Polymers, Number of Authors: 5, Month: Mai, Language: Englisch, Volume: 15, Page: 2406-, Doi: 10.3390/polym15102406, ISSN: 2073-4360, Access Type: Printversion+Elektronisch, Article Link: http://dx.doi.org/10.3390/polym15102406 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı>Kimya>Polimer Bilimi, Article Type: Rezension,

    (2023) Paving the Way for Synthetic Intrinsically Disordered Polymers for Soft Robotics

    Authors: COŞKUNER WEBER ORKİDE, YÜCE ELİF, Uversky Vladimir N., Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: Polymers, Number of Authors: 3, Month: Februar, Language: Englisch, Volume: 15, Doi: 10.3390/polym15030763, ISSN: 2073-4360, Access Type: Printversion+Elektronisch, Article Link: http://dx.doi.org/10.3390/polym15030763 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı>Kimya>Polimer Bilimi, Article Type: Rezension,

    (2023) Effects of the Jokela type of spinal muscular atrophy‐related G66V mutation on the structural ensemble characteristics of CHCHD10

    Authors: ALICI HAKAN, Uversky Vladimir N., Kang David, woo junga alexa, COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, Number of Authors: 5, Month: Januar, Language: Englisch, Volume: 91, Doi: 10.1002/prot.26463, ISSN: 0887-3585, Access Type: Printversion+Elektronisch, Article Link: http://dx.doi.org/10.1002/prot.26463 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı>Kimya>Teorik Kimya>Fiziksel Kimya>Fiziksel Kimya, Article Type: Originalartikel,

    (2022) Insights into the structural properties of SARS-CoV-2 main protease

    Authors: Akbayrak Ibrahim Yagiz, Caglayan Sule Irem, Uversky Vladimir N., Kurgan Lukasz, COŞKUNER WEBER ORKİDE, Index Type: İlgili alanda önde gelen ülkelerin hakemli bilimsel/mesleki dergilerinde yayımlanmış tam makale, Type: people.with_referee, Journal Name: Elsevier BV, Number of Authors: 5, Month: Dezember, Language: Englisch, Volume: 4, Page: 349-355, Doi: 10.1016/j.crstbi.2022.11.001, ISSN: 2665-928X, Access Type: Printversion+Elektronisch, Article Link: http://dx.doi.org/10.1016/j.crstbi.2022.11.001 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı>Biyoloji>Biyoteknoloji>Biyokimya>Biyo-enformatik>Sars CoV-2, Article Type: Originalartikel,

    (2022) Structures of the Wild-Type and S59L Mutant CHCHD10 Proteins Important in Amyotrophic Lateral Sclerosis Frontotemporal Dementia

    Authors: ALICI HAKAN, N. Uversky Vladimir, Kang David E., Woo Junga Alexa, COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: ACS Chemical Neuroscience, Number of Authors: 5, Month: April, Language: Englisch, Volume: 13, Issue: 8, Page: 1273-1280, Doi: 10.1021/acschemneuro.2c00011, ISSN: 1948-7193, Access Type: Printversion+Elektronisch, Article Link: http://dx.doi.org/10.1021/acschemneuro.2c00011 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı>Fizik>Atom, Molekül ve Lazer Fiziği>Biyofizik, Article Type: Originalartikel,

    (2022) Intrinsically disordered proteins and proteins with intrinsically disordered regions in neurodegenerative diseases

    Authors: COŞKUNER WEBER ORKİDE, Mirzanli Ozan, Uversky Vladimir, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: Biophysical Reviews, Number of Authors: 3, Month: Januar, Language: Englisch, Volume: 14, Doi: 10.1007/s12551-022-00968-0, ISSN: 1867-2450, Access Type: Printversion+Elektronisch, Article Link: http://dx.doi.org/10.1007/s12551-022-00968-0 , Subject Matter Knowledge: Sağlık Bilimleri Temel Alanı>Nöroloji>GPCR, Article Type: Rezension,

    (2021) Challenges and limitations in the studies of glycoproteins: A computational chemist's perspective

    Authors: Ballı Öykü İrem, Uversky Vladimir N., DURDAĞI SERDAR, COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: Proteins: Structure, Function, and Bioinformatics, Number of Authors: 4, Month: September, Language: Englisch, Doi: 10.1002/prot.26242, ISSN: 0887-3585, Access Type: Printversion+Elektronisch, Article Link: http://dx.doi.org/10.1002/prot.26242 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı>Biyoloji>Biyoteknoloji>Biyokimya>glikoproteinler, Article Type: Rezension,

    (2021) Secondary structure dependence of amyloid\u2010β(1\u201340) on simulation techniques and force field parameters

    Authors: Caliskan Murat, Mandaci Sunay Y, Uversky Vladimir, COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: Chemical Biology & Drug Design, Number of Authors: 4, Month: Februar, Language: Englisch, Volume: 97, Issue: 5, Page: 1100-1108, Doi: 10.1111/cbdd.13830, ISSN: 1747-0277","1747-0285, Access Type: Elektronisch, Article Link: http://dx.doi.org/10.1111/cbdd.13830 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı>Biyoloji, Article Type: Originalartikel,

    (2021) Secondary structure dependence on simulation techniques and force field parameters: from disordered to ordered proteins

    Authors: COŞKUNER WEBER ORKİDE, Çağlayan Şule İrem, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: Biophysical Reviews, Number of Authors: 2, Month: Januar, Language: Englisch, Doi: 10.1007/s12551-021-00850-5, ISSN: 1867-2450, Access Type: Printversion+Elektronisch, Article Link: http://dx.doi.org/10.1007/s12551-021-00850-5 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı>Biyoloji>Biyokimya>Biyoteknoloji>ordered proteins, disordered proteins, force field parameters , Article Type: Rezension,

    (2021) Structures of MERS-CoV macro domain in aqueous solution with dynamics: Impacts of parallel tempering simulation techniques and\n CHARMM36m\n and\n AMBER99SB\n force field parameters

    Authors: Akbayrak Ibrahim Yagiz, Caglayan Sule Irem, DURDAĞI SERDAR, Kurgan Lukasz, Uversky Vladimir N., Ulver Burak, Dervisoglu Havvanur, HAKLIDIR MEHMET, HASEKİOĞLU ORKUN, COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: Proteins: Structure, Function, and Bioinformatics, Number of Authors: 10, Month: Januar, Language: Englisch, Doi: 10.1002/prot.26150, ISSN: 0887-3585","1097-0134, Access Type: Elektronisch, Article Link: http://dx.doi.org/10.1002/prot.26150 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı>Kimya>Fiziksel Kimya>Teorik Kimya>Biyokimya>MERS-CoV, Article Type: Originalartikel,

    (2020) Current Challenges and Limitations in the Studies of Intrinsically Disordered Proteins in Neurodegenerative Diseases by Computer Simulations

    Authors: COŞKUNER WEBER ORKİDE, Uversky Vladimir, Akbayrak Yagiz, Caglayan Sule, Özcan Zilan, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: Current Alzheimer Research, Number of Authors: 5, Month: Oktober, Language: Englisch, Special Issue: Not Exists, Doi: 10.2174/1567205017666201109094908, ISSN: 1567-2050, Access Type: Printversion, Subject Matter Knowledge: Sağlık Bilimleri Temel Alanı->Nöroloji, Article Type: Rezension,

    (2020) Epitope region identification challenges of intrinsically disordered proteins in neurodegenerative diseases: Secondary structure dependence of α‐synuclein on simulation techniques and force field parameters

    Authors: COŞKUNER WEBER ORKİDE, Uversky Vladimir, Sariaslan M Furkan, Caliskan Murat, Mandaci Sunay Y, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: Chemical Biology Drug Design, Number of Authors: 5, Month: Januar, Language: Englisch, Special Issue: Not Exists, ISSN: 1747-0277, Access Type: Elektronisch, Article Link: https://onlinelibrary.wiley.com/doi/abs/10.1111/cbdd.13662 , Article Type: Originalartikel,

    (2019) Quantum Chemistry Meets Deep Learning for Complex Carbohydrate and Glycopeptide Species I

    Authors: HABİBOĞLU MEHMET GÖKHAN, COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: Zeitschrift für Physikalische Chemie, Number of Authors: 2, Month: April, Language: Englisch, Volume: 233, Issue: 4, Special Issue: Exits, Page: 527-550, Doi: 10.1515/zpch-2018-1251, ISSN: 2196-7156, Access Type: Elektronisch, Article Link: http://www.degruyter.com/view/j/zpch.2019.233.issue-4/zpch-2018-1251/zpch-2018-1251.xml , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2019) Transition Metal Ion Interactions with Disordered Amyloid-β Peptides in the Pathogenesis of Alzheimer’s Disease: Insights from Computational Chemistry Studies

    Authors: Strodel Birgit, COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: Journal of Chemical Information and Modeling, Number of Authors: 2, Month: März, Language: Englisch, Volume: 59, Issue: 5, Special Issue: Exits, Page: 1782-1805, Doi: 10.1021/acs.jcim.8b00983, ISSN: 1549-9596, Access Type: Elektronisch, Article Link: https://pubs.acs.org/doi/10.1021/acs.jcim.8b00983 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Rezension,

    (2019) Alanine Scanning Effects on the Biochemical and Biophysical Properties of Intrinsically Disordered Proteins: A Case Study of the Histidine to Alanine Mutations in Amyloid-beta(42)

    Authors: COŞKUNER WEBER ORKİDE, Uversky Vladimir, Index Type: SCI, Type: people.with_referee, Journal Name: Journal of Chemical Information and Modeling, Number of Authors: 2, Month: Februar, Language: Englisch, Volume: 59, Issue: 2, Special Issue: Not Exists, Page: 871-884, Doi: 10.1021/acs.jcim.8b00926, ISSN: 1549-9596, Access Type: Printversion, Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2018) Insights into the Molecular Mechanisms of Alzheimer’s and Parkinson’s Diseases with Molecular Simulations: Understanding the Roles of Artificial and Pathological Missense Mutations in Intrinsically Disordered Proteins Related to Pathology

    Authors: COŞKUNER WEBER ORKİDE, Uversky Vladimir, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, Number of Authors: 2, Month: Februar, Language: Englisch, Volume: 19, Issue: 2, Special Issue: Exits, Page: 336-396, Doi: 10.3390/ijms19020336, ISSN: 1422-0067, Access Type: Elektronisch, Article Link: http://www.mdpi.com/1422-0067/19/2/336 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Rezension,

    (2017) How accurate are your simulations? Effects of confined aqueous volume and AMBER FF99SB and CHARMM22/CMAP force field parameters on structural ensembles of intrinsically disordered proteins: Amyloid-β42 in water

    Authors: COŞKUNER WEBER ORKİDE, Vladimir Uversky, Index Type: Endekste taranmıyor, Type: people.with_referee, Journal Name: Intrinsically Disordered Proteins, Number of Authors: 2, Month: Oktober, Language: Englisch, Volume: 5, Issue: 1, Special Issue: Not Exists, Page: 1377813-, Doi: 10.1080/21690707.2017.1377813, ISSN: 2169-0707, Access Type: Elektronisch, Article Link: https://tandfonline.com/doi/abs/10.1080/21690707.2017.1377813 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2017) BMP-2 and BMP-9 binding specificities with ALK-3 in aqueous solution with dynamics

    Authors: COŞKUNER WEBER ORKİDE, Uversky Vladimir N., Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF MOLECULAR GRAPHICS MODELLING, Number of Authors: 2, Month: August, Language: Englisch, Volume: 77, Issue: null, Special Issue: Not Exists, Page: 181-188, Doi: 10.1016/j.jmgm.2017.08.005, ISSN: 1093-3263, Access Type: Printversion+Elektronisch, Article Link: https://www.sciencedirect.com/science/article/pii/S109332631730311X?via3Dihub , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2017) Tyrosine Regulates beta-Sheet Structure Formation in Amyloid-beta(42): A New Clustering Algorithm for Disordered Proteins

    Authors: COŞKUNER WEBER ORKİDE, Uversky Vladimir N., Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF CHEMICAL INFORMATION AND MODELING, Number of Authors: 2, Month: Juni, Language: Englisch, Volume: 57, Issue: 6, Special Issue: Not Exists, Page: 1342-1358, Doi: 10.1021/acs.jcim.6b00761, ISSN: 1549-9596, Access Type: Printversion+Elektronisch, Article Link: https://pubs.acs.org/doi/abs/10.1021/acs.jcim.6b00761 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2016) Divalent copper ion bound amyloid-beta(40) and amyloid-beta(42) alloforms are less preferred than divalent zinc ion bound amyloid-beta(40) and amyloid-beta(42) alloforms

    Authors: COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, Number of Authors: 1, Month: Dezember, Language: Englisch, Volume: 21, Issue: 8, Special Issue: Not Exists, Page: 957-973, Doi: 10.1007/s00775-016-1392-5, ISSN: 0949-8257, Access Type: Printversion+Elektronisch, Article Link: https://link.springer.com/article/10.10072Fs00775-016-1392-5 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2014) New force field parameters for metalloproteins I: Divalent copper ion centers including three histidine residues and an oxygen-ligated amino acid residue

    Authors: Wise Olivia, COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF COMPUTATIONAL CHEMISTRY, Number of Authors: 2, Month: Juni, Language: Englisch, Volume: 35, Issue: 17, Special Issue: Not Exists, Page: 1278-1289, Doi: 10.1002/jcc.23622, ISSN: 0192-8651, Access Type: Printversion+Elektronisch, Article Link: https://onlinelibrary.wiley.com/doi/abs/10.1002/jcc.23622 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2014) Adenosine Triphosphate (ATP) Reduces Amyloid-beta Protein Misfolding in vitro

    Authors: COŞKUNER WEBER ORKİDE, Murray Ian V. J., Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF ALZHEIMERS DISEASE, Number of Authors: 2, Month: Februar, Language: Englisch, Volume: 41, Issue: 2, Special Issue: Not Exists, Page: 561-574, Doi: 10.3233/JAD-132300, ISSN: 1387-2877, Access Type: Printversion+Elektronisch, Article Link: https://content.iospress.com/articles/journal-of-alzheimers-disease/jad132300 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2013) Arginine and Disordered Amyloid-beta Peptide Structures: Molecular Level Insights into the Toxicity in Alzheimer’xxs Disease

    Authors: COŞKUNER WEBER ORKİDE, Wise-Scira Olivia, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: ACS CHEMICAL NEUROSCIENCE, Number of Authors: 2, Month: Dezember, Language: Englisch, Volume: 4, Issue: 12, Special Issue: Not Exists, Page: 1549-1558, Doi: 10.1021/cn4001389, ISSN: 1948-7193, Access Type: Printversion+Elektronisch, Article Link: https://pubs.acs.org/doi/10.1021/cn4001389 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2013) Structures and Free Energy Landscapes of the A53T Mutant-Type alpha-Synuclein Protein and Impact of A53T Mutation on the Structures of the Wild-Type alpha-Synuclein Protein with Dynamics

    Authors: COŞKUNER WEBER ORKİDE, Wise-Scira Olivia, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: ACS CHEMICAL NEUROSCIENCE, Number of Authors: 2, Month: Juli, Language: Englisch, Volume: 4, Issue: 7, Special Issue: Not Exists, Page: 1101-1113, Doi: 10.1021/cn400041j, ISSN: 1948-7193, Access Type: Printversion+Elektronisch, Article Link: https://pubs.acs.org/doi/10.1021/cn400041j , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2013) Structures and Free Energy Landscapes of the Wild-Type and A30P Mutant-Type alpha-Synuclein Proteins with Dynamics

    Authors: Wise-Scira Olivia, Aloglu Ahmet Kemal, Dunn Aquila, Sakallioglu Isin Tuna, COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: ACS CHEMICAL NEUROSCIENCE, Number of Authors: 5, Month: März, Language: Englisch, Volume: 4, Issue: 3, Special Issue: Not Exists, Page: 486-497, Doi: 10.1021/cn300198q, ISSN: 1948-7193, Access Type: Printversion+Elektronisch, Article Link: https://pubs.acs.org/doi/10.1021/cn300198q , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2013) Structures of the E46K Mutant-Type alpha-Synuclein Protein and Impact of E46K Mutation on the Structures of the Wild-Type alpha-Synuclein Protein

    Authors: Wise-Scira Olivia, Dunn Aquila, Aloglu Ahmet K., Sakallioglu Isin T., COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: ACS CHEMICAL NEUROSCIENCE, Number of Authors: 5, Month: März, Language: Englisch, Volume: 4, Issue: 3, Special Issue: Not Exists, Page: 498-508, Doi: 10.1021/cn3002027, ISSN: 1948-7193, Access Type: Printversion+Elektronisch, Article Link: https://pubs.acs.org/doi/10.1021/cn3002027 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2013) The Structures of the E22 Delta Mutant-Type Amyloid-beta Alloforms and the Impact of E22 Delta Mutation on the Structures of the Wild-Type Amyloid-beta Alloforms

    Authors: COŞKUNER WEBER ORKİDE, Wise-Scira Olivia, Perry George, Kitahara Taizo, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: ACS CHEMICAL NEUROSCIENCE, Number of Authors: 4, Month: Februar, Language: Englisch, Volume: 4, Issue: 2, Special Issue: Not Exists, Page: 310-320, Doi: 10.1021/cn300149j, ISSN: 1948-7193, Access Type: Printversion+Elektronisch, Article Link: https://pubs.acs.org/doi/10.1021/cn300149j , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2012) Structures and free energy landscapes of aqueous zinc(II)-bound amyloid-beta(1-40) and zinc(II)-bound amyloid-beta(1-42) with dynamics

    Authors: Wise-Scira Olivia, Xu Liang, Perry George, COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, Number of Authors: 4, Month: August, Language: Englisch, Volume: 17, Issue: 6, Special Issue: Not Exists, Page: 927-938, Doi: 10.1007/s00775-012-0909-9, ISSN: 0949-8257, Access Type: Printversion+Elektronisch, Article Link: https://link.springer.com/article/10.10072Fs00775-012-0909-9 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2012) Probing and Trapping a Sensitive Conformation: Amyloid-beta Fibrils, Oligomers, and Dimers

    Authors: Fawver Janelle N., Duong Karen T., Wise-Scira Olivia, Chapa Rachel Petrofes, Schall Hayley E., COŞKUNER WEBER ORKİDE, Zhu Xiongwei, Colom Luis V., Murray Ian V. J., Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF ALZHEIMERS DISEASE, Number of Authors: 9, Month: Juni, Language: Englisch, Volume: 32, Issue: 1, Special Issue: Not Exists, Page: 197-215, Doi: 10.3233/JAD-2012-120880, ISSN: 1387-2877, Access Type: Printversion+Elektronisch, Article Link: https://content.iospress.com/articles/journal-of-alzheimers-disease/jad120880 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2011) Amyloid-beta peptide structure in aqueous solution varies with fragment size

    Authors: Wise-Scira Olivia, Xu Liang, Kitahara Taizo, Perry George, COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF CHEMICAL PHYSICS, Number of Authors: 5, Month: November, Language: Englisch, Volume: 135, Issue: 20, Special Issue: Not Exists, Doi: 10.1063/1.3662490, ISSN: 0021-9606, Access Type: Printversion+Elektronisch, Article Link: https://aip.scitation.org/doi/10.1063/1.3662490 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2010) Single Ion and Dimerization Studies of the Al(III) Ion in Aqueous Solution

    Authors: COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF PHYSICAL CHEMISTRY A, Number of Authors: 1, Month: Oktober, Language: Englisch, Volume: 114, Issue: 41, Special Issue: Not Exists, Page: 10981-10987, Doi: 10.1021/jp102906c, ISSN: 1089-5639, Access Type: Printversion+Elektronisch, Article Link: https://pubs.acs.org/doi/10.1021/jp102906c , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2009) Dynamic and Structural Properties of Aqueous Arsenic Solutions

    Authors: COŞKUNER WEBER ORKİDE, Allison Thomas C., Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: CHEMPHYSCHEM, Number of Authors: 2, Month: Juni, Language: Englisch, Volume: 10, Issue: 8, Special Issue: Not Exists, Page: 1187-1189, Doi: 10.1002/cphc.200800650, ISSN: 1439-4235, Access Type: Printversion+Elektronisch, Article Link: https://onlinelibrary.wiley.com/doi/10.1002/cphc.200800650 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Aufsatz,

    (2009) Identification of Active Sites of Biomolecules II: Saccharide and Transition Metal Ion in Aqueous Solution

    Authors: COŞKUNER WEBER ORKİDE, Bergeron Denis E., Rincon Luis, Hudgens Jeffrey W., Gonzalez Carlos A., Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF PHYSICAL CHEMISTRY A, Number of Authors: 5, Month: März, Language: Englisch, Volume: 113, Issue: 11, Special Issue: Not Exists, Page: 2491-2499, Doi: 10.1021/jp805747f, ISSN: 1089-5639, Access Type: Printversion+Elektronisch, Article Link: https://pubs.acs.org/doi/10.1021/jp805747f , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2008) Ligand exchange reactions in the formation of diphosphine-protected gold clusters

    Authors: Bergeron Denis E., COŞKUNER WEBER ORKİDE, Hudgens Jeffrey W., Gonzalez Carlos A., Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF PHYSICAL CHEMISTRY C, Number of Authors: 4, Month: August, Language: Englisch, Volume: 112, Issue: 33, Special Issue: Not Exists, Page: 12808-12814, Doi: 10.1021/jp804046e, ISSN: 1932-7447, Access Type: Printversion+Elektronisch, Article Link: https://pubs.acs.org/doi/10.1021/jp804046e , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2008) Glycosidic linkage conformation of methyl-alpha-mannopyranoside

    Authors: COŞKUNER WEBER ORKİDE, Bergeron Denis E., Rincon Luis, Hudgens Jeffrey W., Gonzalez Carlos A., Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF CHEMICAL PHYSICS, Number of Authors: 5, Month: Juli, Language: Englisch, Volume: 129, Issue: 4, Special Issue: Not Exists, Doi: 10.1063/1.2958916, ISSN: 0021-9606, Access Type: Printversion+Elektronisch, Article Link: https://aip.scitation.org/doi/10.1063/1.2958916 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2008) Identification of active sites of biomolecules. 1. Methyl-alpha-mannopyranoside and Fe-III

    Authors: COŞKUNER WEBER ORKİDE, Bergeron Denis E., Rincon Luis, Hudgens Jeffrey W., Gonzalez Carlos A., Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF PHYSICAL CHEMISTRY A, Number of Authors: 5, Month: April, Language: Englisch, Volume: 112, Issue: 13, Special Issue: Not Exists, Page: 2940-2947, Doi: 10.1021/jp711759q, ISSN: 1089-5639, Access Type: Printversion+Elektronisch, Article Link: https://pubs.acs.org/doi/10.1021/jp711759q , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2008) Coordination studies of Al-EDTA in aqueous solution

    Authors: COŞKUNER WEBER ORKİDE, Jarvis Emily A. A., Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF PHYSICAL CHEMISTRY A, Number of Authors: 2, Month: März, Language: Englisch, Volume: 112, Issue: 12, Special Issue: Not Exists, Page: 2628-2633, Doi: 10.1021/jp7098575, ISSN: 1089-5639, Access Type: Printversion+Elektronisch, Article Link: https://pubs.acs.org/doi/10.1021/jp7098575 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2007) Preferred conformation of the glycosidic linkage of methyl-beta-mannose

    Authors: COŞKUNER WEBER ORKİDE, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: JOURNAL OF CHEMICAL PHYSICS, Number of Authors: 1, Month: Juli, Language: Englisch, Volume: 127, Issue: 1, Special Issue: Not Exists, Doi: 10.1063/1.2747238, ISSN: 0021-9606, Access Type: Printversion+Elektronisch, Article Link: https://aip.scitation.org/doi/10.1063/1.2747238 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2007) Water dissociation in the presence of metal ions

    Authors: COŞKUNER WEBER ORKİDE, Jarvis Emily A. A., Allison Thomas C., Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, Number of Authors: 3, Month: Mai, Language: Englisch, Volume: 46, Issue: 41, Special Issue: Not Exists, Page: 7853-7855, Doi: 10.1002/anie.200701617, ISSN: 1433-7851, Access Type: Printversion+Elektronisch, Article Link: https://onlinelibrary.wiley.com/doi/10.1002/anie.200701617 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Aufsatz,

    (2007) Hydrophobic interactions of xenon by Monte Carlo simulations

    Authors: COŞKUNER WEBER ORKİDE, Ulrich Deiters, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: ZEITSCHRIFT FUR PHYSIKALISCHE CHEMIE-INTERNATIONAL JOURNAL OF RESEARCH IN PHYSICAL CHEMISTRY CHEMICAL PHYSICS, Number of Authors: 2, Month: April, Language: Englisch, Volume: 221, Issue: 6, Special Issue: Not Exists, Page: 785-799, Doi: 10.1524/zpch.2007.221.6.785, ISSN: 0942-9352, Access Type: Printversion+Elektronisch, Article Link: https://www.degruyter.com/view/j/zpch.2007.221.issue-6/zpch.2007.221.6.785/zpch.2007.221.6.785.xml?format=INT , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    (2006) Hydrophobic interactions by Monte Carlo simulations

    Authors: COŞKUNER WEBER ORKİDE, Ulrich Deiters, Index Type: SCI-Expanded kapsamındaki dergilerde yayımlanmış tam makale, Type: people.with_referee, Journal Name: ZEITSCHRIFT FUR PHYSIKALISCHE CHEMIE-INTERNATIONAL JOURNAL OF RESEARCH IN PHYSICAL CHEMISTRY CHEMICAL PHYSICS, Number of Authors: 2, Month: August, Language: Englisch, Volume: 220, Issue: 3, Special Issue: Not Exists, Page: 349-369, Doi: 10.1524/zpch.2006.220.3.349, ISSN: 0942-9352, Access Type: Printversion+Elektronisch, Article Link: https://www.degruyter.com/view/j/zpch.2006.220.3.349/zpch.2006.220.3.349.xml , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

    National

    (2018) Revisiting Cu(II) Bound Amyloid-β40 and Amyloid-β42 Peptides: Varying Coordination Chemistries

    Authors: COŞKUNER WEBER ORKİDE, Index Type: TR DİZİN, Type: people.with_referee, Journal Name: Journal of the Turkish Chemical Society, Section A: Chemistry, Number of Authors: 1, Month: August, Language: Türkisch, Volume: 5, Special Issue: Not Exists, Page: 981-1008, Doi: 10.18596/jotcsa.424144, ISSN: 2149-0120, Access Type: Elektronisch, Article Link: http://dergipark.gov.tr/doi/10.18596/jotcsa.424144 , Subject Matter Knowledge: Fen Bilimleri ve Matematik Temel Alanı->Kimya, Article Type: Originalartikel,

Administrative Duty

2023 30/12/9999

Fakülte Yönetim Kurulu Üyeliği

TÜRK-ALMAN ÜNİVERSİTESİ, TÜRKİYE
2020 2023

Bölüm Başkanı

TÜRK-ALMAN ÜNİVERSİTESİ, TÜRKİYE
2018 30/12/9999

Anabilim Dalı Başkanı

TÜRK-ALMAN ÜNİVERSİTESİ, TÜRKİYE
2018 2018

Komisyon Üyeliği

FEN FAKÜLTESİ
TÜRK-ALMAN ÜNİVERSİTESİ, TÜRKİYE
2011 2012

Komisyon Üyeliği

Sciences
University of Texas at San Antonio, AMERİKA BİRLEŞİK DEVLETLERİ
2009 2014

Komisyon Üyeliği

Sciences
University of Texas at San Antonio, AMERİKA BİRLEŞİK DEVLETLERİ

Work Experience

2019 2019

Bursiyer

DAAD Bursiyeri
2003 2009

Guest Scientist

National Institute of Standards and Technology

Contact

Contact details

E-Mail: weber@tau.edu.tr


Office Phone Number: : +902163333337